Curated BLAST for Genomes

 

Curated BLAST

Searching in Chlorobium limicola DSM 245 (GCF_000020465.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Chlorobium limicola DSM 245, or try another query

tpiA CLIM_RS08420 Clim_1670 WP_012466585.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

 52% id,
99% cov

tpiA / O32757: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii

 52% id,
99% cov

tpiA / P50918: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactococcus lactis

 50% id,
99% cov

More...

CLIM_RS12610 Clim_2515 WP_012467397.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 55% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory