Curated BLAST for Genomes

 

Curated BLAST

Searching in Chlorobium limicola DSM 245 (GCF_000020465.1)

Found 8 curated entries in PaperBLAST's database that match '6.3.1.1' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Chlorobium limicola DSM 245, or try another query

lysS CLIM_RS07965 Clim_1586 WP_012466505.1: lysine--tRNA ligase
is similar to:
PaperBLAST

Q9V228: asparagine-tRNA ligase (EC 6.1.1.22); aspartate-ammonia ligase (EC 6.3.1.1) from Pyrococcus abyssi

25% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory