Curated BLAST for Genomes

 

Curated BLAST

Searching in Chlorobium limicola DSM 245 (GCF_000020465.1)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Chlorobium limicola DSM 245, or try another query

carB CLIM_RS02385 Clim_0467 WP_012465441.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

47% id,
47% cov

carB CLIM_RS09890 Clim_1967 WP_012466868.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

43% id,
45% cov

accC CLIM_RS01065 Clim_0198 WP_012465178.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

23% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory