Curated BLAST for Genomes

 

Curated BLAST

Searching in Chlorobaculum parvum NCIB 8327 (GCF_000020505.1)

Found 12 curated entries in PaperBLAST's database that match '1.1.1.282' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Chlorobaculum parvum NCIB 8327, or try another query

CPAR_RS08355 Cpar_1649 WP_012502877.1: shikimate dehydrogenase
is similar to:
PaperBLAST

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

35% id,
98% cov

Q9X5C9: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

34% id,
98% cov

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

34% id,
96% cov

More...

CPAR_RS03410 Cpar_0668 WP_012501921.1: HesA/MoeB/ThiF family protein
is similar to:
PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

46% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory