Curated BLAST for Genomes

 

Curated BLAST

Searching in Chlorobaculum parvum NCIB 8327 (GCF_000020505.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Chlorobaculum parvum NCIB 8327, or try another query

CPAR_RS01220 Cpar_0232 WP_012501493.1: ROK family protein
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

38% id,
99% cov

B1VZT1: glucokinase (EC 2.7.1.2) from Streptomyces griseus

35% id,
98% cov

GLK_BACSU / P54495: Glucokinase; Glucose kinase; EC 2.7.1.2 from Bacillus subtilis
P54495: glucokinase (EC 2.7.1.2) from Bacillus subtilis

37% id,
95% cov

More...

CPAR_RS11390 WP_332130361.1: ROK family protein
is similar to:
PaperBLAST

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

38% id,
49% cov

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis

35% id,
50% cov

GLK_THEMA / Q9X1I0: Glucokinase; ATP-dependent glucokinase; ATP-GLK; Glucose kinase; EC 2.7.1.2 from Thermotoga maritima

31% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2285049-2285780 (frame -2) on NC_011027.1 Chlorobaculum parvum NCIB 8327, complete sequence
is similar to:
PaperBLAST

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis
Also see hits to annotated proteins above

42% id,
48% cov

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis
Also see hits to annotated proteins above

43% id,
44% cov

2284750-2285667 (frame -1) on NC_011027.1 Chlorobaculum parvum NCIB 8327, complete sequence
is similar to:
PaperBLAST

Sama_1405: glucokinase (EC 2.7.1.2) from Shewanella amazonensis
Also see hits to annotated proteins above

37% id,
53% cov

Sama_2231: glucokinase (EC 2.7.1.2) from Shewanella amazonensis
Also see hits to annotated proteins above

36% id,
54% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory