Curated BLAST for Genomes

 

Curated BLAST

Searching in Prosthecochloris aestuarii DSM 271 (GCF_000020625.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Prosthecochloris aestuarii DSM 271, or try another query

guaB PAES_RS07150 Paes_1433 WP_012505986.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

26% id,
35% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

26% id,
24% cov

fni PAES_RS01930 Paes_0384 WP_012504978.1: type 2 isopentenyl-diphosphate Delta-isomerase
is similar to:
PaperBLAST

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

29% id,
30% cov

CYB2_TALSN / B8MKR3: L-lactate dehydrogenase (cytochrome); EC 1.1.2.3 from Talaromyces stipitatus

34% id,
15% cov

rsxC PAES_RS06565 Paes_1310 WP_012505870.1: electron transport complex subunit RsxC
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

29% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory