Curated BLAST for Genomes

 

Curated BLAST

Searching in Prosthecochloris aestuarii DSM 271 (GCF_000020625.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Prosthecochloris aestuarii DSM 271, or try another query

PAES_RS02730 Paes_0549 WP_012505142.1: branched-chain amino acid transaminase
is similar to:		 PaperBLAST

ilvE / O27481: branched-chain-amino-acid aminotransferase subunit (EC 2.6.1.42) from Methanothermobacter thermautotrophicus

 59% id,
98% cov

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli
ilvE / RF|YP_026247: branched-chain-amino-acid aminotransferase; EC 2.6.1.42 from Escherichia coli
ilvE / P0AB80: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

 52% id,
97% cov

N515DRAFT_2015: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Dyella japonica

 50% id,
97% cov

More...

PAES_RS07515 Paes_1502 WP_012506055.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 26% id,
98% cov

pabB PAES_RS02275 Paes_0455 WP_012505048.1: aminodeoxychorismate synthase component I
is similar to:		 PaperBLAST

ilvE / A6UWA0: branched-chain amino acid aminotransferase subunit (EC 2.6.1.6; EC 2.6.1.42) from Methanococcus aeolicus
A6UWA0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Methanococcus aeolicus

 25% id,
81% cov

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

 25% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory