Curated BLAST for Genomes

 

Curated BLAST

Searching in Prosthecochloris aestuarii DSM 271 (GCF_000020625.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Prosthecochloris aestuarii DSM 271, or try another query

PAES_RS01290 Paes_0261 WP_012504855.1: homoserine kinase
is similar to:
PaperBLAST

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

49% id,
99% cov

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

44% id,
100% cov

N515DRAFT_0576: homoserine kinase (EC 2.7.1.39) from Dyella japonica

37% id,
92% cov

More...

PAES_RS07580 Paes_1516 WP_012506069.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

33% id,
62% cov

PAES_RS08705 Paes_1742 WP_012506293.1: dehydrogenase
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

25% id,
47% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory