Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidithiobacillus ferrooxidans ATCC 23270 (GCF_000021485.1)

Found 24 curated entries in PaperBLAST's database that match '2.6.1.5' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidithiobacillus ferrooxidans ATCC 23270, or try another query

hemL AFE_RS15145 AFE_3303 WP_012537706.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

H8WR05: tyrosine transaminase (EC 2.6.1.5) from Variovorax paradoxus

35% id,
91% cov

alaC AFE_RS02230 AFE_0472 WP_012536158.1: alanine transaminase
is similar to:
PaperBLAST

ATTY_CAEEL / Q93703: Tyrosine aminotransferase; TAT; L-tyrosine:2-oxoglutarate aminotransferase; EC 2.6.1.5 from Caenorhabditis elegans

24% id,
79% cov

hisC AFE_RS04215 AFE_0898 WP_009567888.1: histidinol-phosphate transaminase
is similar to:
PaperBLAST

A0A2K9VP55: tyrosine transaminase (EC 2.6.1.5) from Malus domestica

24% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory