Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurihydrogenibium azorense Az-Fu1 (GCF_000021545.1)

Found 22 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurihydrogenibium azorense Az-Fu1, or try another query

thrC SULAZ_RS08160 SULAZ_1669 WP_012674777.1: threonine synthase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

25% id,
85% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

28% id,
56% cov

cysM SULAZ_RS05180 SULAZ_1060 WP_012674712.1: cysteine synthase B
is similar to:
PaperBLAST

PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

23% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory