Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfurihydrogenibium azorense Az-Fu1 (GCF_000021545.1)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfurihydrogenibium azorense Az-Fu1, or try another query

gcvH SULAZ_RS02520 SULAZ_0520 WP_012674474.1: glycine cleavage system protein GcvH
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

50% id,
98% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

48% id,
97% cov

GCSH_STAAM / P64213: Glycine cleavage system H protein; Octanoyl/lipoyl carrier protein from Staphylococcus aureus

48% id,
98% cov

More...

SULAZ_RS02535 SULAZ_0523 WP_041675979.1: pyruvate/oxaloacetate carboxyltransferase
is similar to:
PaperBLAST

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

33% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory