Curated BLAST for Genomes

 

Curated BLAST

Searching in Persephonella marina EX-H1 (GCF_000021565.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Persephonella marina EX-H1, or try another query

PERMA_RS05240 PERMA_1054 WP_012676079.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

DHOM_NEIG1 / Q5F8J4: NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

 44% id,
99% cov

DvMF_1412: homoserine dehydrogenase (EC 1.1.1.3) from Desulfovibrio vulgaris

 42% id,
97% cov

D8WXQ1: homoserine dehydrogenase (EC 1.1.1.3) from Bacillus methanolicus

 40% id,
100% cov

More...

PERMA_RS08105 PERMA_1634 WP_012675675.1: aspartate kinase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 43% id,
53% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

 31% id,
52% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

 35% id,
44% cov

More...

pyrH PERMA_RS01145 PERMA_0233 WP_012675507.1: UMP kinase
is similar to:		 PaperBLAST

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 25% id,
23% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

 35% id,
11% cov

O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max

 30% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory