Curated BLAST for Genomes

 

Curated BLAST

Searching in Persephonella marina EX-H1 (GCF_000021565.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Persephonella marina EX-H1, or try another query

PERMA_RS04545 PERMA_0913 WP_012675437.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 48% id,
95% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 39% id,
92% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 37% id,
98% cov

More...

cimA PERMA_RS05365 PERMA_1079 WP_012675635.1: citramalate synthase
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 35% id,
92% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 30% id,
99% cov

HOSA_THET2 / O87198: Homocitrate synthase; HCS; EC 2.3.3.14 from Thermus thermophilus
hcs / O87198: homocitrate synthase (EC 2.3.3.14) from Thermus thermophilus

 31% id,
94% cov

More...

oadA PERMA_RS03115 PERMA_0625 WP_012676096.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 21% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory