Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Persephonella marina EX-H1 (GCF_000021565.1)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Persephonella marina EX-H1, or try another query

PERMA_RS07575 PERMA_1528 WP_012675715.1: citrate/2-methylcitrate synthase is similar to:	PaperBLAST
P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis	40% id, 96% cov
PRPC1_CORGL / Q8NSH7: 2-methylcitrate synthase 1; 2-MCS; MCS; Citrate synthase 1; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSH7: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	37% id, 99% cov
PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum	36% id, 98% cov
PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium	35% id, 99% cov
Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa	35% id, 98% cov
PRPC_MYCTE / H8F0D7: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; CS; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis PRPC_MYCTU / I6Y9Q3: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Mycobacterium tuberculosis	37% id, 93% cov
Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens	34% id, 98% cov
Q9KSC1: 2-methylcitrate synthase (EC 2.3.3.5) from Vibrio cholerae	34% id, 97% cov
PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis	34% id, 98% cov
PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans	33% id, 96% cov
PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli prpC / GB\|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	33% id, 95% cov
Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator	33% id, 93% cov
Q8X694: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli	32% id, 95% cov
PRPC_SALTY / Q56063: 2-methylcitrate synthase; 2-MCS; mcs; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Salmonella typhimurium prpC / Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella typhimurium Q56063: 2-methylcitrate synthase (EC 2.3.3.5) from Salmonella enterica	32% id, 95% cov
PRPC_YARLI / Q6C793: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Yarrowia lipolytica	26% id, 79% cov
PRPC_ASPFC / B0YD89: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus PRPC_ASPFM / Q50I20: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 1; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus mcsA / GI\|63028051: methylcitrate synthase; EC 2.3.3.5 from Aspergillus fumigatus Q50I20: 2-methylcitrate synthase (EC 2.3.3.5) from Aspergillus fumigatus	26% id, 80% cov
More...

PERMA_RS05175 PERMA_1040 WP_012676936.1: citryl-CoA lyase is similar to:	PaperBLAST
PRPC_YARLI / Q6C793: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Yarrowia lipolytica	24% id, 54% cov
PRPC_EMENI / Q9TEM3: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Emericella nidulans mcsA / GI\|5763968: methylcitrate synthase; EC 2.3.3.5 from Emericella nidulans	25% id, 43% cov
PRPC_ASPFC / B0YD89: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 2; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus PRPC_ASPFM / Q50I20: 2-methylcitrate synthase, mitochondrial; Methylcitrate synthase; (2S,3S)-2-methylcitrate synthase; Citrate synthase 1; EC 2.3.3.5; EC 2.3.3.16 from Aspergillus fumigatus mcsA / GI\|63028051: methylcitrate synthase; EC 2.3.3.5 from Aspergillus fumigatus Q50I20: 2-methylcitrate synthase (EC 2.3.3.5) from Aspergillus fumigatus	25% id, 42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory