Curated BLAST for Genomes

 

Curated BLAST

Searching in Persephonella marina EX-H1 (GCF_000021565.1)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Persephonella marina EX-H1, or try another query

cysM PERMA_RS07850 PERMA_1581 WP_012676510.1: cysteine synthase B
is similar to:
PaperBLAST

CS1 / A2EI82: O-phosphoserine sulfhydrylase monomer (EC 2.5.1.47; EC 2.5.1.65) from Trichomonas vaginalis

48% id,
98% cov

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

47% id,
98% cov

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

41% id,
99% cov

More...

thrC PERMA_RS01265 PERMA_0257 WP_012676942.1: threonine synthase
is similar to:
PaperBLAST

CS1 / A2EI82: O-phosphoserine sulfhydrylase monomer (EC 2.5.1.47; EC 2.5.1.65) from Trichomonas vaginalis

28% id,
88% cov

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

28% id,
88% cov

trpB PERMA_RS02860 PERMA_0573 WP_012676076.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

Q84IF9: cysteine synthase (EC 2.5.1.47); L-3-cyanoalanine synthase (EC 4.4.1.9) from Geobacillus stearothermophilus

26% id,
88% cov

E5LPF4: cysteine synthase (EC 2.5.1.47) from Lacticaseibacillus casei

24% id,
88% cov

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

31% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory