Curated BLAST for Genomes

 

Curated BLAST

Searching in Persephonella marina EX-H1 (GCF_000021565.1)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Persephonella marina EX-H1, or try another query

argH PERMA_RS00470 PERMA_0095 WP_012675497.1: argininosuccinate lyase
is similar to:
PaperBLAST

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

52% id,
98% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

50% id,
97% cov

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

49% id,
96% cov

More...

purB PERMA_RS03025 PERMA_0606 WP_012676571.1: adenylosuccinate lyase
is similar to:
PaperBLAST

1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli

25% id,
88% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

25% id,
86% cov

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

25% id,
77% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory