Curated BLAST for Genomes

 

Curated BLAST

Searching in Nautilia profundicola AmH (GCF_000021725.1)

Found 6 curated entries in PaperBLAST's database that match 'deoxy%ribonate transporter' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Nautilia profundicola AmH, or try another query

NAMH_RS08110 NAMH_1649 WP_012663783.1: DHA2 family efflux MFS transporter permease subunit
is similar to:
PaperBLAST

PS417_07265: 2-deoxy-D-ribonate transporter 1 from Pseudomonas simiae

24% id,
93% cov

BWI76_RS23715: 2-deoxy-D-ribonate transporter 1 from Klebsiella michiganensis

27% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory