Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocella silvestris BL2 (GCF_000021745.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Methylocella silvestris BL2, or try another query

MSIL_RS01035 Msil_0202 WP_012589253.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 43% id,
97% cov

serA MSIL_RS08965 Msil_1760 WP_012590776.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

 42% id,
97% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 40% id,
99% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 39% id,
99% cov

More...

serA MSIL_RS07040 Msil_1376 WP_012590411.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

 40% id,
97% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 38% id,
99% cov

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 37% id,
99% cov

More...

MSIL_RS12680 Msil_2485 WP_012591482.1: D-glycerate dehydrogenase
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 35% id,
87% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 28% id,
91% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 26% id,
97% cov

More...

MSIL_RS12515 Msil_2451 WP_012591449.1: NAD-dependent formate dehydrogenase
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 36% id,
75% cov

U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii

 31% id,
74% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 27% id,
75% cov

More...

MSIL_RS01175 Msil_0228 WP_012589279.1: D-2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 26% id,
99% cov

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 30% id,
84% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 29% id,
83% cov

More...

MSIL_RS16145 Msil_3171 WP_012592148.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 28% id,
91% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 30% id,
64% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 32% id,
57% cov

More...

adhP MSIL_RS09285 Msil_1821 WP_012590836.1: alcohol dehydrogenase AdhP
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 27% id,
91% cov

MSIL_RS08725 Msil_1713 WP_012590730.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 29% id,
81% cov

Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa

 32% id,
69% cov

SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli
SerA / b2913: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
serA / RF|NP_417388: D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Escherichia coli
serA / P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95; EC 1.1.1.399) from Escherichia coli
P0A9T0: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli
C3SVM7: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Escherichia coli

 32% id,
65% cov

More...

MSIL_RS10140 Msil_1987 WP_012590999.1: zinc-binding dehydrogenase
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 30% id,
58% cov

MSIL_RS12455 Msil_2439 WP_012591437.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 31% id,
56% cov

MSIL_RS19130 Msil_3767 WP_012592717.1: heavy metal translocating P-type ATPase
is similar to:		 PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 24% id,
30% cov

MSIL_RS08635 Msil_1695 WP_012590712.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 29% id,
17% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 29% id,
12% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 31% id,
9% cov

More...

MSIL_RS03770 Msil_0733 WP_012589774.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 32% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

809095-810642 (frame +1) on NC_011666.1 Methylocella silvestris BL2, complete sequence
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae
Also see hits to annotated proteins above

 30% id,
15% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory