Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocella silvestris BL2 (GCF_000021745.1)

Found 23 curated entries in PaperBLAST's database that match '3.6.1.31' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylocella silvestris BL2, or try another query

MSIL_RS12990 Msil_2548 WP_012591541.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

CCNA_03854: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Caulobacter crescentus

52% id,
92% cov

Ga0059261_1051: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Sphingomonas koreensis

49% id,
93% cov

PfGW456L13_303: phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) from Pseudomonas fluorescens

41% id,
99% cov

More...

mazG MSIL_RS02730 Msil_0537 WP_012589579.1: nucleoside triphosphate pyrophosphohydrolase
is similar to:
PaperBLAST

Q72CU7: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris
DVU1186: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) from Desulfovibrio vulgaris

34% id,
99% cov

hisI MSIL_RS01815 Msil_0355 WP_012589404.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

46% id,
44% cov

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC 3.5.4.19; EC 3.6.1.31 from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19; EC 3.6.1.31) from Arabidopsis thaliana

33% id,
34% cov

HIS2_SCHPO / O59667: Histidine biosynthesis bifunctional protein his7; EC 3.5.4.19; EC 3.6.1.31 from Schizosaccharomyces pombe
his7 / GI|3006138: phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase His7; EC 3.5.4.19; EC 3.6.1.31 from Schizosaccharomyces pombe

37% id,
21% cov

More...

hisD MSIL_RS15640 Msil_3070 WP_012592048.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

37% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory