Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfitobacterium hafniense DCB-2 (GCF_000021925.1)

Found 9 curated entries in PaperBLAST's database that match '6.3.2.43' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Desulfitobacterium hafniense DCB-2, or try another query

DHAF_RS15400 Dhaf_3089 WP_005812967.1: ATP-grasp domain-containing protein
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

26% id,
60% cov

lysS DHAF_RS00835 Dhaf_0163 WP_005809769.1: lysine--tRNA ligase
is similar to:
PaperBLAST

A5U2Z7: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis
P9WFU7: lysyltransferase (EC 2.3.2.3); [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Mycobacterium tuberculosis

38% id,
41% cov

carB DHAF_RS15995 Dhaf_3202 WP_015944470.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

25% id,
53% cov

carB DHAF_RS01835 Dhaf_0352 WP_015942713.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

27% id,
41% cov

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

32% id,
33% cov

carB DHAF_RS20035 Dhaf_4016 WP_015944958.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

LYSX_THET8 / Q5SH23: Alpha-aminoadipate--LysW ligase LysX; AAA--LysW ligase LysX; EC 6.3.2.43 from Thermus thermophilus
lysX / Q5SH23: L-2-aminoadipate--LysW ligase monomer (EC 6.3.2.43) from Thermus thermophilus
Q5SH23: [amino group carrier protein]-L-2-aminoadipate ligase (EC 6.3.2.43) from Thermus thermophilus

26% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory