Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfitobacterium hafniense DCB-2 (GCF_000021925.1)

Found 3 curated entries in PaperBLAST's database that match 'ATP-dependent reduction of co(II)balamin' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfitobacterium hafniense DCB-2, or try another query

DHAF_RS16525 Dhaf_3310 WP_011460092.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

34% id,
91% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

28% id,
44% cov

DHAF_RS13980 Dhaf_2795 WP_005811724.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

32% id,
91% cov

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

27% id,
78% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

26% id,
66% cov

DHAF_RS12750 Dhaf_2573 WP_015944095.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

31% id,
89% cov

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

27% id,
74% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

29% id,
65% cov

DHAF_RS19375 Dhaf_3879 WP_015944860.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

31% id,
90% cov

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

24% id,
44% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

31% id,
10% cov

DHAF_RS06340 Dhaf_1265 WP_041271926.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

29% id,
75% cov

DvMF_1398: ATP-dependent reduction of co(II)balamin (RamA-like) from Desulfovibrio vulgaris

28% id,
36% cov

DHAF_RS21585 Dhaf_4322 WP_015945168.1: ASKHA domain-containing protein
is similar to:
PaperBLAST

DVU0908: ATP-dependent reduction of co(II)balamin from Desulfovibrio vulgaris

28% id,
79% cov

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

33% id,
65% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory