Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylobacterium nodulans ORS 2060 (GCF_000022085.1)

Found 25 curated entries in PaperBLAST's database that match '2.4.2.2' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Methylobacterium nodulans ORS 2060, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4820899-4822392 (frame +1) on NC_011894.1 Methylobacterium nodulans ORS 2060, complete sequence
is similar to:
PaperBLAST

Udp / b3831: uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli
udp / P12758: uridine phosphorylase (EC 2.4.2.2) from Escherichia coli

25% id,
65% cov

TK1479 / Q5JJC1: uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis

29% id,
46% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory