Curated BLAST for Genomes

 

Curated BLAST

Searching in Brucella microti CCM 4915 (GCF_000022745.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.59' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Brucella microti CCM 4915, or try another query

BMI_RS14525 BMI_II952 WP_004687071.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

62% id,
94% cov

BMI_RS11920 BMI_II395 WP_002966209.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

39% id,
94% cov

betA BMI_RS02555 BMI_I552 WP_004689534.1: choline dehydrogenase
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

39% id,
93% cov

BMI_RS09440 BMI_I2064 WP_004689309.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

39% id,
93% cov

BMI_RS07600 BMI_I1654 WP_041594712.1: GMC family oxidoreductase N-terminal domain-containing protein
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.

36% id,
94% cov

BMI_RS13470 BMI_II727 WP_004682047.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

pydE / A0A0A3J5T1: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59; EC 1.1.1.298) from Ureibacillus massiliensis

31% id,
96% cov

BMI_RS04415 BMI_I948 WP_004688310.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

HPD1 / A0A1D8PQ07: 3-hydroxypropanonate dehydrogenase (EC 1.1.1.59) from Candida albicans
A0A1D8PQ07: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Candida albicans

26% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

380304-382076 (frame +3) on NC_013118.1 Brucella microti CCM 4915 chromosome 2, complete sequence
is similar to:
PaperBLAST

dddA / C8YX89: 3-hydroxypropionate dehydrogenase (EC 1.1.1.59) from Halomonas sp.
Also see hits to annotated proteins above

39% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory