Curated BLAST for Genomes

 

Curated BLAST

Searching in Brucella microti CCM 4915 (GCF_000022745.1)

Found 13 curated entries in PaperBLAST's database that match '6.2.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Brucella microti CCM 4915, or try another query

BMI_RS01360 BMI_I295 WP_002967402.1: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
90% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
92% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
88% cov

BMI_RS10185 BMI_II15 WP_004686826.1: (2,3-dihydroxybenzoyl)adenylate synthase
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

24% id,
90% cov

BMI_RS08045 BMI_I1750 WP_015799731.1: propionyl-CoA synthetase
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

439390-441102 (frame -1) on NC_013118.1 Brucella microti CCM 4915 chromosome 2, complete sequence
is similar to:
PaperBLAST

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
Also see hits to annotated proteins above

26% id,
68% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory