Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium leguminosarum bv. trifolii WSM1325 (GCF_000023185.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.16' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Rhizobium leguminosarum bv. trifolii WSM1325, or try another query

RLEG_RS18500 Rleg_3746 WP_012759066.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

26% id,
97% cov

RLEG_RS33910 Rleg_6255 WP_012760149.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

26% id,
97% cov

RLEG_RS25575 Rleg_5161 WP_003562666.1: FGGY-family carbohydrate kinase
is similar to:
PaperBLAST

Q9KBQ3: ribulokinase (EC 2.7.1.16) from Alkalihalobacillus halodurans

23% id,
93% cov

CA265_RS08625: Ribulokinase (EC 2.7.1.16) from Pedobacter sp.

31% id,
20% cov

glpK RLEG_RS15455 Rleg_3131 WP_012758538.1: glycerol kinase GlpK
is similar to:
PaperBLAST

Echvi_0515: Ribulokinase (EC 2.7.1.16) from Echinicola vietnamensis

28% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory