Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Rhizobium leguminosarum bv. trifolii WSM1325 (GCF_000023185.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.2.4' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhizobium leguminosarum bv. trifolii WSM1325, or try another query

deoC RLEG_RS11270 Rleg_2280 WP_041935535.1: deoxyribose-phosphate aldolase is similar to:	PaperBLAST
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens	58% id, 100% cov
Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae	40% id, 95% cov
DEOC_SALTY / Q8ZJV8: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium	38% id, 93% cov
DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli Tlr / b4381: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli deoC / P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli	38% id, 93% cov
A0A125YLW2: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Toxoplasma gondii	34% id, 92% cov
D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis	31% id, 95% cov
DEOC_STRP6 / Q5XA31: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Streptococcus pyogenes	33% id, 86% cov
DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis	29% id, 94% cov
DEOC_RHOE4 / C0ZUQ6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Rhodococcus erythropolis C0ZUQ6: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Rhodococcus erythropolis	32% id, 79% cov
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deoC RLEG_RS22155 Rleg_4464 WP_012759718.1: deoxyribose-phosphate aldolase is similar to:	PaperBLAST
DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli Tlr / b4381: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli deoC / P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli	56% id, 96% cov
Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae	55% id, 96% cov
DEOC_SALTY / Q8ZJV8: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium	54% id, 96% cov
A0A125YLW2: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Toxoplasma gondii	42% id, 93% cov
DEOC_PSEU2 / Q4ZMV1: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Pseudomonas syringae	38% id, 91% cov
C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.	40% id, 85% cov
Q9AIP7: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus mutans	38% id, 88% cov
D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis	34% id, 95% cov
DEOC_RHOE4 / C0ZUQ6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Rhodococcus erythropolis C0ZUQ6: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Rhodococcus erythropolis	36% id, 89% cov
DEOC_ACIB4 / B5IEU6: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aciduliprofundum boonei	36% id, 88% cov
deoC / C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp. C0LSK9: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp.	33% id, 97% cov
DEOC_THET8 / Q5SJ28: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermus thermophilus	39% id, 81% cov
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens	40% id, 78% cov
DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis	37% id, 84% cov
DEOC_STRP6 / Q5XA31: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Streptococcus pyogenes	35% id, 88% cov
DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis	36% id, 84% cov
More...

RLEG_RS01130 Rleg_0222 WP_012755949.1: quinone-dependent dihydroorotate dehydrogenase is similar to:	PaperBLAST
D5AHU8: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis	31% id, 52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory