Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidimicrobium ferrooxidans DSM 10331 (GCF_000023265.1)

Found 32 curated entries in PaperBLAST's database that match '2.6.1.13' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Acidimicrobium ferrooxidans DSM 10331, or try another query

AFER_RS08610 Afer_1662 WP_015799057.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 40% id,
93% cov

OAT_PLAF7 / Q6LFH8: Ornithine aminotransferase; PfOAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum
Q6LFH8: ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum

 35% id,
88% cov

OAT_YEAST / P07991: Ornithine aminotransferase; OTAse; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

 33% id,
92% cov

More...

AFER_RS03605 Afer_0700 WP_015798139.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 36% id,
91% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 34% id,
96% cov

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 34% id,
92% cov

More...

AFER_RS04845 Afer_0941 WP_015798369.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 34% id,
95% cov

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 33% id,
94% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 31% id,
92% cov

More...

AFER_RS02935 Afer_0575 WP_015798024.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 31% id,
95% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 31% id,
97% cov

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 29% id,
94% cov

More...

AFER_RS06120 Afer_1190 WP_015798608.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 31% id,
94% cov

OAT_PLAF7 / Q6LFH8: Ornithine aminotransferase; PfOAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum
Q6LFH8: ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum

 31% id,
92% cov

OAT_YEAST / P07991: Ornithine aminotransferase; OTAse; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

 30% id,
94% cov

More...

AFER_RS01310 Afer_0253 WP_143712053.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

 30% id,
92% cov

OAT_SCHPO / Q9P7L5: Ornithine aminotransferase car2; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Schizosaccharomyces pombe
car2 / RF|NP_596588.1: ornithine transaminase Car2; EC 2.6.1.13 from Schizosaccharomyces pombe

 29% id,
89% cov

OAT_KLULA / Q6CWC1: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Kluyveromyces lactis

 29% id,
89% cov

More...

AFER_RS10265 Afer_1983 WP_015799362.1: transaminase
is similar to:		 PaperBLAST

A0A3B6KM96: ornithine aminotransferase (EC 2.6.1.13) from Triticum aestivum

 26% id,
82% cov

A0A3B6LSQ4: ornithine aminotransferase (EC 2.6.1.13) from Triticum aestivum

 25% id,
83% cov

OAT_ORYSJ / Q10G56: Ornithine aminotransferase, mitochondrial; Ornithine delta-aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Oryza sativa

 26% id,
80% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1241917-1243452 (frame -3) on NC_013124.1 Acidimicrobium ferrooxidans DSM 10331, complete sequence
is similar to:		 PaperBLAST

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis
Also see hits to annotated proteins above

 31% id,
95% cov

OAT_RAT / P04182: Ornithine aminotransferase, mitochondrial; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Rattus norvegicus
Also see hits to annotated proteins above

 30% id,
95% cov

Q3ZCF5: ornithine aminotransferase (EC 2.6.1.13) from Bos taurus
Also see hits to annotated proteins above

 31% id,
89% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory