Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidimicrobium ferrooxidans DSM 10331 (GCF_000023265.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Acidimicrobium ferrooxidans DSM 10331, or try another query

glyA AFER_RS09320 Afer_1805 WP_280956798.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

56% id,
95% cov

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

51% id,
99% cov

AFER_RS03495 Afer_0679 WP_015798122.1: GntG family PLP-dependent aldolase
is similar to:
PaperBLAST

ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei

42% id,
95% cov

THA1_ARATH / Q8RXU4: Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana

40% id,
93% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

39% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory