Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidimicrobium ferrooxidans DSM 10331 (GCF_000023265.1)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Acidimicrobium ferrooxidans DSM 10331, or try another query

cysK AFER_RS06875 Afer_1336 WP_015798746.1: cysteine synthase A
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

40% id,
100% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

39% id,
99% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

47% id,
66% cov

More...

AFER_RS01390 Afer_0269 WP_015797743.1: cysteine synthase family protein
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

39% id,
99% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

37% id,
97% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

36% id,
73% cov

More...

AFER_RS07735 Afer_1495 WP_049755415.1: PLP-dependent aspartate aminotransferase family protein
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

38% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory