Curated BLAST for Genomes

 

Curated BLAST

Searching in Acidimicrobium ferrooxidans DSM 10331 (GCF_000023265.1)

Found 3 curated entries in PaperBLAST's database that match 'IGP synthase, amidotransferase subunit' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Acidimicrobium ferrooxidans DSM 10331, or try another query

hisH AFER_RS05675 Afer_1108 WP_015798527.1: imidazole glycerol phosphate synthase subunit HisH
is similar to:
PaperBLAST

DVU0285: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

34% id,
97% cov

DvMF_2305: IGP synthase, amidotransferase subunit (EC 4.3.2.10) from Desulfovibrio vulgaris

33% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory