Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermomonospora curvata DSM 43183 (GCF_000024385.1)

Found 12 curated entries in PaperBLAST's database that match '1.1.1.282' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thermomonospora curvata DSM 43183, or try another query

TCUR_RS10575 Tcur_2138 WP_012852488.1: shikimate dehydrogenase
is similar to:
PaperBLAST

A0A3Q7IET9: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Solanum lycopersicum

30% id,
52% cov

TCUR_RS10500 Tcur_2122 WP_012852472.1: HesA/MoeB/ThiF family protein
is similar to:
PaperBLAST

A4QB65: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

26% id,
37% cov

Q9X5C9: quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Corynebacterium glutamicum

26% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2503736-2504554 (frame +2) on NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence
is similar to:
PaperBLAST

Q88K85: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

30% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory