Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermomonospora curvata DSM 43183 (GCF_000024385.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thermomonospora curvata DSM 43183, or try another query

thrB TCUR_RS19360 Tcur_3936 WP_012854249.1: homoserine kinase
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

41% id,
88% cov

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

31% id,
99% cov

Q4Q6Y2: homoserine kinase (EC 2.7.1.39) from Leishmania major

36% id,
83% cov

More...

TCUR_RS14555 Tcur_2952 WP_012853278.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

34% id,
86% cov

TCUR_RS19075 Tcur_3878 WP_012854191.1: gluconokinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

29% id,
85% cov

TCUR_RS04855 Tcur_0987 WP_041440911.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

Q4Q6Y2: homoserine kinase (EC 2.7.1.39) from Leishmania major

26% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4421861-4422955 (frame +2) on NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris
Also see hits to annotated proteins above

28% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory