Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermomonospora curvata DSM 43183 (GCF_000024385.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thermomonospora curvata DSM 43183, or try another query

TCUR_RS17515 Tcur_3554 WP_281055216.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

76% id,
96% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

52% id,
96% cov

TCUR_RS02195 Tcur_0450 WP_012850832.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

34% id,
94% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

32% id,
91% cov

TCUR_RS19500 Tcur_3966 WP_012854279.1: thiamine pyrophosphate-requiring protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

30% id,
94% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

30% id,
91% cov

TCUR_RS00525 Tcur_0107 WP_012850499.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

28% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4518255-4520156 (frame -2) on NC_013510.1 Thermomonospora curvata DSM 43183, complete sequence
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

30% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory