Curated BLAST for Genomes

 

Curated BLAST

Searching in Ammonifex degensii KC4 (GCF_000024605.1)

Found 58 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Ammonifex degensii KC4, or try another query

ADEG_RS03355 Adeg_0656 WP_015738681.1: shikimate dehydrogenase
is similar to:		 PaperBLAST

AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus

 44% id,
99% cov

AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii
aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii

 43% id,
99% cov

AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus
Q5SJF8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermus thermophilus

 42% id,
98% cov

More...

ADEG_RS08315 Adeg_1649 WP_015739619.1: NAD(P)H-binding protein
is similar to:		 PaperBLAST

Q9WYI1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Thermotoga maritima

 30% id,
39% cov

CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus

 29% id,
32% cov

Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida

 26% id,
36% cov

hemA ADEG_RS06370 Adeg_1260 WP_015739247.1: glutamyl-tRNA reductase
is similar to:		 PaperBLAST

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

 35% id,
29% cov

Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida

 30% id,
31% cov

aroB ADEG_RS03370 Adeg_0659 WP_015738684.1: 3-dehydroquinate synthase
is similar to:		 PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

 37% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

 32% id,
23% cov

Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii

 39% id,
5% cov

More...

aroA ADEG_RS05805 Adeg_1149 WP_015739144.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:		 PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

 30% id,
26% cov

ADEG_RS05110 Adeg_1008 WP_015739018.1: HesA/MoeB/ThiF family protein
is similar to:		 PaperBLAST

Q88JP1: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); quinate/shikimate dehydrogenase [NAD(P)+] (EC 1.1.1.282) from Pseudomonas putida

 38% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory