Curated BLAST for Genomes

 

Curated BLAST

Searching in Ammonifex degensii KC4 (GCF_000024605.1)

Found 2 curated entries in PaperBLAST's database that match '1.1.1.378' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ammonifex degensii KC4, or try another query

fabG ADEG_RS04855 Adeg_0958 WP_015738970.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

43% id,
98% cov

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

41% id,
98% cov

ADEG_RS01445 Adeg_0287 WP_015738329.1: 3-oxoacyl-ACP reductase family protein
is similar to:
PaperBLAST

lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

37% id,
98% cov

lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

37% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory