Curated BLAST for Genomes

 

Curated BLAST

Searching in Ammonifex degensii KC4 (GCF_000024605.1)

Found 16 curated entries in PaperBLAST's database that match '1.4.1.16' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ammonifex degensii KC4, or try another query

gap ADEG_RS09375 Adeg_1857 WP_015739817.1: type I glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

DAPDH_LYSSH / Q9KWR0: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; Meso-alpha,epsilon-diaminopimelate D-dehydrogenase; EC 1.4.1.16 from Lysinibacillus sphaericus
dapdh / Q9KWR0: meso-diaminopimelate dehydrogenase subunit (EC 1.4.1.16) from Lysinibacillus sphaericus
Q9KWR0: diaminopimelate dehydrogenase (EC 1.4.1.16) from Lysinibacillus sphaericus

38% id,
17% cov

DAPDH_URETH / G1UII1: Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Ureibacillus thermosphaericus
G1UII1: diaminopimelate dehydrogenase (EC 1.4.1.16) from Ureibacillus thermosphaericus

49% id,
12% cov

dapB ADEG_RS01735 Adeg_0347 WP_015738385.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

F7YTT4: diaminopimelate dehydrogenase (EC 1.4.1.16) from Pseudothermotoga thermarum

48% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory