Curated BLAST for Genomes

 

Curated BLAST

Searching in Ammonifex degensii KC4 (GCF_000024605.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Ammonifex degensii KC4, or try another query

thrB ADEG_RS04490 Adeg_0883 WP_015738898.1: homoserine kinase
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

38% id,
91% cov

Q4Q6Y2: homoserine kinase (EC 2.7.1.39) from Leishmania major

32% id,
93% cov

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

30% id,
99% cov

More...

ADEG_RS03365 Adeg_0658 WP_015738683.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

32% id,
86% cov

ADEG_RS10595 Adeg_2097 WP_169302577.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

27% id,
86% cov

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

25% id,
86% cov

cmk ADEG_RS05800 Adeg_1148 WP_245527880.1: (d)CMP kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

30% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory