Curated BLAST for Genomes

 

Curated BLAST

Searching in Ammonifex degensii KC4 (GCF_000024605.1)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ammonifex degensii KC4, or try another query

glnA ADEG_RS01935 Adeg_0386 WP_015738418.1: type I glutamate--ammonia ligase
is similar to:
PaperBLAST

GLN1A_BACSU / P12425: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis
P12425: glutamine synthetase (EC 6.3.1.2) from Bacillus subtilis

66% id,
99% cov

GLNA_THET8 / Q5SIP0: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Thermus thermophilus

63% id,
99% cov

C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.

62% id,
98% cov

More...

glnA ADEG_RS09545 Adeg_1891 WP_277996024.1: type I glutamate--ammonia ligase
is similar to:
PaperBLAST

GLN1B_NOSS1 / P00964: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Nostoc sp.

63% id,
98% cov

GLN1B_SYNY3 / P77961: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Synechocystis sp.
P77961: glutamine synthetase (EC 6.3.1.2) from Synechocystis sp.

63% id,
97% cov

Q9RHZ1: glutamine synthetase (EC 6.3.1.2) from Trichormus azollae

62% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory