Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella variicola At-22 (GCF_000025465.1)

Found 4 curated entries in PaperBLAST's database that match '3.5.99.5' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Klebsiella variicola At-22, or try another query

KVAR_RS12640 Kvar_2542 WP_008804827.1: AtzE family amidohydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
97% cov

atzF KVAR_RS12795 Kvar_2573 WP_012968197.1: allophanate hydrolase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

28% id,
98% cov

ridA KVAR_RS22945 Kvar_4600 WP_002886926.1: 2-iminobutanoate/2-iminopropanoate deaminase
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

29% id,
93% cov

nbaF / Q83V27: 2-aminomuconate deaminase (EC 3.5.99.5) from Pseudomonas fluorescens

27% id,
92% cov

rutC KVAR_RS16570 Kvar_3343 WP_004204505.1: pyrimidine utilization protein C
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

30% id,
89% cov

KVAR_RS15980 Kvar_3224 WP_012968545.1: amidase family protein
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
62% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4885049-4885468 (frame +2) on NC_013850.1 Klebsiella variicola At-22, complete sequence
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.
Also see hits to annotated proteins above

30% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory