Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella variicola At-22 (GCF_000025465.1)

Found 11 curated entries in PaperBLAST's database that match '4.1.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella variicola At-22, or try another query

trpCF KVAR_RS15170 Kvar_3055 WP_012968448.1: bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
is similar to:
PaperBLAST

TrpC / b1262: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli
trpC / P00909: fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli

82% id,
100% cov

P84126: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Thermus thermophilus

38% id,
94% cov

A1KJ27: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
A5U2W7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis
P9WFX7: indole-3-glycerol-phosphate synthase (EC 4.1.1.48) from Mycobacterium tuberculosis

34% id,
97% cov

More...

pabA KVAR_RS01760 Kvar_0355 WP_012540425.1: aminodeoxychorismate synthase component 2
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

50% id,
38% cov

trpD KVAR_RS15165 Kvar_3054 WP_004148109.1: bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
is similar to:
PaperBLAST

TRPG_YEAST / P00937: Multifunctional tryptophan biosynthesis protein; EC 4.1.3.27; EC 4.1.1.48 from Saccharomyces cerevisiae

36% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory