Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella variicola At-22 (GCF_000025465.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Klebsiella variicola At-22, or try another query

KVAR_RS16155 Kvar_3260 WP_012968564.1: triose-phosphate isomerase
is similar to:
PaperBLAST

Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae

97% id,
100% cov

A0A1D3TX75: triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum

42% id,
97% cov

TPIS_GEOSE / P00943: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus
P00943: triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus

38% id,
99% cov

More...

tpiA KVAR_RS00455 Kvar_0096 WP_002922909.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

94% id,
100% cov

TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
tpiA / PDB|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina

64% id,
100% cov

Q8MPF2: triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor

50% id,
99% cov

More...

pgk KVAR_RS03560 Kvar_0713 WP_008806453.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

45% id,
61% cov

lldD KVAR_RS10275 Kvar_2048 WP_008804462.1: FMN-dependent L-lactate dehydrogenase LldD
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

24% id,
77% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory