Curated BLAST for Genomes

 

Curated BLAST

Searching in Klebsiella variicola At-22 (GCF_000025465.1)

Found 4 curated entries in PaperBLAST's database that match '5.3.3.7' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Klebsiella variicola At-22, or try another query

KVAR_RS09660 Kvar_1922 WP_162493243.1: substrate-binding domain-containing protein
is similar to:
PaperBLAST

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp.

47% id,
96% cov

KVAR_RS21770 Kvar_4368 WP_012968968.1: 4-oxalomesaconate tautomerase
is similar to:
PaperBLAST

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

43% id,
77% cov

KVAR_RS00235 Kvar_0052 WP_012967021.1: 4-oxalomesaconate tautomerase
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

33% id,
97% cov

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

42% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory