Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)
Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).
These curated entries have 28 distinct sequences.
Running ublast with E ≤ 0.01
Found 5 relevant proteins in Allochromatium vinosum DSM 180, or try another query
| ALVIN_RS05320 Alvin_1073 WP_012970288.1: DUF3683 domain-containing protein is similar to: | PaperBLAST |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 57% id, 98% cov |
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans | 57% id, 92% cov |
| ALVIN_RS07245 Alvin_1467 WP_012970675.1: NAD(P)-dependent alcohol dehydrogenase is similar to: | PaperBLAST |
cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori | 44% id, 98% cov |
| ALVIN_RS10395 Alvin_2085 WP_012971279.1: phosphoglycerate dehydrogenase is similar to: | PaperBLAST |
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa | 31% id, 89% cov |
Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii | 29% id, 93% cov |
EhPGDH: D-phosphoglycerate dehydrogenase; EC 1.1.1.95 from Entamoeba histolytica | 29% id, 90% cov |
| ALVIN_RS09605 Alvin_1931 WP_012971128.1: FAD-linked oxidase C-terminal domain-containing protein is similar to: | PaperBLAST |
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans | 26% id, 29% cov |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 27% id, 23% cov |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 35% id, 7% cov |
| ALVIN_RS00605 Alvin_0120 WP_012969365.1: FAD-linked oxidase C-terminal domain-containing protein is similar to: | PaperBLAST |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 36% id, 12% cov |
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans | 35% id, 11% cov |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 34% id, 7% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1235295-1239758 (frame +3) on NC_013851.1 Allochromatium vinosum DSM 180, complete sequence is similar to: | PaperBLAST |
HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae | 57% id, 100% cov |
BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans | 57% id, 92% cov |
| 2390356-2391567 (frame -2) on NC_013851.1 Allochromatium vinosum DSM 180, complete sequence is similar to: | PaperBLAST |
Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa | 31% id, 96% cov |
SERA_ECOLI / P0A9T0: D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli | 30% id, 96% cov |
U3RH61: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Acanthamoeba castellanii | 30% id, 88% cov |
Lawrence Berkeley National Laboratory