Curated BLAST for Genomes

 

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 24 curated entries in PaperBLAST's database that match '1.2.1.11' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Allochromatium vinosum DSM 180, or try another query

asd ALVIN_RS07955 Alvin_1605 WP_012970812.1: aspartate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

DHAS_PSEAE / Q51344: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Pseudomonas aeruginosa

73% id,
100% cov

C5BB06: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Edwardsiella ictaluri

69% id,
100% cov

DHAS_ECOLI / P0A9Q9: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Escherichia coli
Dap / b3433: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Escherichia coli
asd / P0A9Q9: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Escherichia coli

67% id,
100% cov

More...

argC ALVIN_RS00525 Alvin_0109 WP_012969354.1: N-acetyl-gamma-glutamyl-phosphate reductase
is similar to:
PaperBLAST

Q5KPK7: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Cryptococcus neoformans

22% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory