Curated BLAST for Genomes

 

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 5 curated entries in PaperBLAST's database that match '2.1.3.11' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Allochromatium vinosum DSM 180, or try another query

argF ALVIN_RS09560 Alvin_1922 WP_012971119.1: ornithine carbamoyltransferase
is similar to:
PaperBLAST

Echvi_3849: N-succinylornithine carbamoyltransferase (EC 2.1.3.11) from Echinicola vietnamensis

28% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory