Curated BLAST for Genomes

 

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 10 curated entries in PaperBLAST's database that match '2.3.1.223' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Allochromatium vinosum DSM 180, or try another query

ALVIN_RS00315 Alvin_0063 WP_012969311.1: acetyl-CoA C-acetyltransferase
is similar to:
PaperBLAST

paaJ / Q845J8: β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) from Pseudomonas sp.
Q845J8: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223) from Pseudomonas sp.

47% id,
100% cov

BPHYT_RS17345: bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) from Burkholderia phytofirmans

45% id,
100% cov

PAAJ_ECOLI / P0C7L2: 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase; EC 2.3.1.174; EC 2.3.1.223 from Escherichia coli
YdbW / b1397: β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli
paaJ / P0C7L2: β-ketoadipyl-CoA thiolase (EC 2.3.1.223; EC 2.3.1.174) from Escherichia coli

46% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory