Curated BLAST for Genomes

 

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 22 curated entries in PaperBLAST's database that match '2.3.3.14' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Allochromatium vinosum DSM 180, or try another query

nifV ALVIN_RS07410 Alvin_1499 WP_012970706.1: homocitrate synthase
is similar to:		 PaperBLAST

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 60% id,
98% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 49% id,
95% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 51% id,
89% cov

More...

ALVIN_RS01770 Alvin_0356 WP_012969593.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 47% id,
95% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 38% id,
97% cov

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 40% id,
92% cov

More...

ALVIN_RS14770 Alvin_2959 WP_043796377.1: alpha-isopropylmalate synthase regulatory domain-containing protein
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 33% id,
96% cov

A0A1Y6KBA1: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 34% id,
89% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.

 33% id,
93% cov

More...

leuA ALVIN_RS06805 Alvin_1379 WP_012970588.1: 2-isopropylmalate synthase
is similar to:		 PaperBLAST

AKSA_METJA / Q57926: Homocitrate synthase AksA; (R)-homo(2)citrate synthase; (R)-homo(3)citrate synthase; EC 2.3.3.14; EC 2.3.3.- from Methanocaldococcus jannaschii

 27% id,
92% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus

 24% id,
93% cov

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 28% id,
63% cov

More...

ALVIN_RS10770 Alvin_2162 WP_012971355.1: aldolase catalytic domain-containing protein
is similar to:		 PaperBLAST

HOSA_SULTO / Q971S5: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfurisphaera tokodaii

 26% id,
50% cov

HOSA_SULAC / Q4J989: Homocitrate synthase; HCS; EC 2.3.3.14 from Sulfolobus acidocaldarius
Q4J989: homocitrate synthase (EC 2.3.3.14) from Sulfolobus acidocaldarius

 23% id,
52% cov

NIFV_AZOVI / P05342: Homocitrate synthase; EC 2.3.3.14 from Azotobacter vinelandii
nifV / P05342: homocitrate synthase monomer (EC 2.3.3.14) from Azotobacter vinelandii

 32% id,
20% cov

oadA ALVIN_RS08265 Alvin_1668 WP_012970874.1: sodium-extruding oxaloacetate decarboxylase subunit alpha
is similar to:		 PaperBLAST

P58637: homocitrate synthase (EC 2.3.3.14) from Nostoc sp.

 28% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3341857-3343581 (frame -2) on NC_013851.1 Allochromatium vinosum DSM 180, complete sequence
is similar to:		 PaperBLAST

A0A1Y6KBA1: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.
Also see hits to annotated proteins above

 33% id,
97% cov

A0A0S6UXF5: homocitrate synthase (EC 2.3.3.14) from Bradyrhizobium sp.
Also see hits to annotated proteins above

 32% id,
97% cov

D0VY45: homocitrate synthase (EC 2.3.3.14) from Lotus japonicus
Also see hits to annotated proteins above

 27% id,
98% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory