Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Allochromatium vinosum DSM 180, or try another query

tpiA ALVIN_RS12145 Alvin_2432 WP_012971614.1: triose-phosphate isomerase is similar to:	PaperBLAST
TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli	52% id, 99% cov
TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens	51% id, 99% cov
TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus	50% id, 100% cov
TPIS_MORMI / P50921: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina tpiA / PDB\|1AW1_A: triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina P50921: triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina	49% id, 99% cov
TPIS_BACCE / Q4MQ55: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus	46% id, 99% cov
P35144: triose-phosphate isomerase (EC 5.3.1.1) from Priestia megaterium	45% id, 100% cov
Q0ZAG6: triose-phosphate isomerase (EC 5.3.1.1) from Leishmania donovani	48% id, 94% cov
tpiA / O32757: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii	47% id, 97% cov
TPIS_LEIME / P48499: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Leishmania mexicana P48499: triose-phosphate isomerase (EC 5.3.1.1) from Leishmania mexicana	48% id, 94% cov
TPIS_MYCTU / P9WG43: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Mycobacterium tuberculosis P9WG43: triose-phosphate isomerase (EC 5.3.1.1) from Mycobacterium tuberculosis	46% id, 98% cov
TPIS_GEOSE / P00943: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus P00943: triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus	45% id, 99% cov
P52270: triose-phosphate isomerase (EC 5.3.1.1) from Trypanosoma cruzi	46% id, 97% cov
TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae	46% id, 96% cov
TPIS_STRCO / Q9Z520: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Streptomyces coelicolor	46% id, 97% cov
TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans	45% id, 99% cov
TPIS_TRYBB / P04789: Triosephosphate isomerase, glycosomal; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Trypanosoma brucei P04789: triose-phosphate isomerase (EC 5.3.1.1) from Trypanosoma brucei	45% id, 98% cov
Q8MPF2: triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor	44% id, 99% cov
Q0H294: triose-phosphate isomerase (EC 5.3.1.1) from Pteris vittata	45% id, 97% cov
TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster	44% id, 99% cov
TPIS_STAAR / Q6GIL6: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Staphylococcus aureus Q6GIL6: triose-phosphate isomerase (EC 5.3.1.1) from Staphylococcus aureus	43% id, 100% cov
A8B3A8: triose-phosphate isomerase (EC 5.3.1.1) from Rhipicephalus microplus	44% id, 98% cov
TPIS_PROCL / F5A6E9: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Pro c 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Procambarus clarkii	44% id, 99% cov
tpiA / P50918: triosephosphate isomerase subunit (EC 5.3.1.1) from Lactococcus lactis	44% id, 98% cov
TPIS_ENTH1 / O02611: Triosephosphate isomerase; EhTIM; Triose-phosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica O02611: triose-phosphate isomerase (EC 5.3.1.1) from Entamoeba histolytica	45% id, 97% cov
A2FT29: triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis	45% id, 95% cov
TIM / PDB\|1M6J_A: triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica	45% id, 96% cov
TPI / GI\|2143243: triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica	45% id, 96% cov
TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans Q10657: triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans	43% id, 98% cov
TPIS_CHICK / P00940: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Gallus gallus P00940: triose-phosphate isomerase (EC 5.3.1.1) from Gallus gallus	44% id, 98% cov
A2EGX9: triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis	45% id, 94% cov
TPIS_ARATH / P48491: Triosephosphate isomerase, cytosolic; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Arabidopsis thaliana CTIMC / P48491: cytosolic triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana P48491: triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana	43% id, 98% cov
TPIS_SCYPA / A0A1L5YRA2: Triosephosphate isomerase; TIM; Allergen Scy p 8; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Scy p 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Scylla paramamosain	43% id, 98% cov
TPIS_PLAFA / Q07412: Triosephosphate isomerase; PfTIM; Triose-phosphate isomerase; EC 5.3.1.1 from Plasmodium falciparum Q07412: triose-phosphate isomerase (EC 5.3.1.1) from Plasmodium falciparum	42% id, 99% cov
tpi1: triosephosphate isomerase; EC 5.3.1.1 from Schizosaccharomyces pombe	43% id, 95% cov
TPIS_PARBA / Q96VN5: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Paracoccidioides lutzii	44% id, 94% cov
TPIS_HUMAN / P60174: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Homo sapiens TPI1 / P60174: Triosephosphate isomerase (EC 5.3.1.1) from Homo sapiens P60174: triose-phosphate isomerase (EC 5.3.1.1) from Homo sapiens	42% id, 98% cov
P36186: triose-phosphate isomerase (EC 5.3.1.1) from Giardia intestinalis	44% id, 94% cov
TPIS_RABIT / P00939: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus P00939: triose-phosphate isomerase (EC 5.3.1.1) from Oryctolagus cuniculus	41% id, 98% cov
TPIS_CANAL / Q9P940: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Candida albicans TPI1: triosephosphate isomerase (TIM); EC 5.3.1.1 from Candida albicans	41% id, 98% cov
TPIS_YEAST / P00942: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Saccharomyces cerevisiae P00942: triose-phosphate isomerase (EC 5.3.1.1) from Saccharomyces cerevisiae	42% id, 96% cov
Q7NAQ4: triose-phosphate isomerase (EC 5.3.1.1) from Mycoplasma gallisepticum	40% id, 97% cov
Q5CSE7: triose-phosphate isomerase (EC 5.3.1.1) from Cryptosporidium parvum	40% id, 94% cov
Q5S7Y5: triose-phosphate isomerase (EC 5.3.1.1) from Chlamydomonas reinhardtii	43% id, 86% cov
A0A1D3TX75: triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum	33% id, 94% cov
Q7X216: triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae	32% id, 96% cov
TPIS2_LISIN / Q92EU4: Triosephosphate isomerase 2; TIM 2; TPI 2; Triose-phosphate isomerase 2; EC 5.3.1.1 from Listeria innocua	30% id, 96% cov
TPIS_HELPY / P56076: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Helicobacter pylori P56076: triose-phosphate isomerase (EC 5.3.1.1) from Helicobacter pylori	35% id, 75% cov
TPIS_PLAOI / P85814: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; Allergen Pla o 4; EC 5.3.1.1 from Platanus orientalis	71% id, 36% cov
PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima	50% id, 38% cov
More...

trpC ALVIN_RS00855 Alvin_0170 WP_012969415.1: indole-3-glycerol phosphate synthase TrpC is similar to:	PaperBLAST
TPIS_THETK / Q8NKN9: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax Q8NKN9: triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax	29% id, 92% cov

ALVIN_RS01575 Alvin_0314 WP_012969553.1: phosphoglycerate kinase is similar to:	PaperBLAST
PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima	43% id, 61% cov

ALVIN_RS13620 Alvin_2728 WP_012971905.1: thiazole synthase is similar to:	PaperBLAST
TPIS_METBR / O74025: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii O74025: triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii	33% id, 50% cov
TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii	27% id, 58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory