Curated BLAST for Genomes

 

Curated BLAST

Searching in Allochromatium vinosum DSM 180 (GCF_000025485.1)

Found 11 curated entries in PaperBLAST's database that match '6.2.1.16' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Allochromatium vinosum DSM 180, or try another query

acs ALVIN_RS00830 Alvin_0165 WP_012969410.1: acetate--CoA ligase
is similar to:
PaperBLAST

aacS / D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans
D6EQU8: acetoacetate-CoA ligase (EC 6.2.1.16) from Streptomyces lividans

28% id,
96% cov

AACS_HUMAN / Q86V21: Acetoacetyl-CoA synthetase; Acyl-CoA synthetase family member 1; Protein sur-5 homolog; EC 6.2.1.16 from Homo sapiens

27% id,
93% cov

AACS_RHIME / Q9Z3R3: Acetoacetyl-coenzyme A synthetase; Acetoacetyl-CoA synthetase; EC 6.2.1.16 from Rhizobium meliloti
SMc00774: Acetoacetate--CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti
Q9Z3R3: acetoacetate-CoA ligase (EC 6.2.1.16) from Sinorhizobium meliloti

27% id,
93% cov

More...

ALVIN_RS08980 Alvin_1809 WP_012971009.1: acyl-CoA ligase (AMP-forming), exosortase A system-associated
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
92% cov

ALVIN_RS13560 Alvin_2716 WP_012971893.1: acyl-[ACP]--phospholipid O-acyltransferase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

28% id,
87% cov

ALVIN_RS06980 Alvin_1414 WP_012970623.1: long-chain fatty acid--CoA ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

33% id,
68% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

30% id,
19% cov

ALVIN_RS07420 Alvin_1501 WP_223295279.1: 1-acylglycerol-3-phosphate O-acyltransferase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

27% id,
77% cov

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

37% id,
20% cov

ALVIN_RS09215 Alvin_1854 WP_012971052.1: AMP-dependent synthetase/ligase
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

26% id,
71% cov

ALVIN_RS13130 Alvin_2631 WP_012971808.1: AMP-binding protein
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

25% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory