Curated BLAST for Genomes

 

Curated BLAST

Searching in Ferroglobus placidus DSM 10642 (GCF_000025505.1)

Found 60 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Ferroglobus placidus DSM 10642, or try another query

FERP_RS10670 Ferp_2126 WP_012966595.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

64% id,
99% cov

LEU3_SULTO / P50455: 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; Beta-IPM dehydrogenase; EC 1.1.1.85 from Sulfurisphaera tokodaii
P50455: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Sulfurisphaera tokodaii

48% id,
99% cov

LEU3_HALVD / D4GYE8: 3-isopropylmalate dehydrogenase; EC 1.1.1.85 from Haloferax volcanii

48% id,
99% cov

More...

icd FERP_RS04315 Ferp_0862 WP_012965373.1: isocitrate dehydrogenase (NADP(+))
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

39% id,
99% cov

P61494: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

32% id,
99% cov

LEU3_THET8 / Q5SIY4: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Thermus thermophilus
Q5SIY4: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

32% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory